{
  "schema_version": "1.0",
  "tool_contract_version": "1.0",
  "dotmatch_version": "0.4.0",
  "tool": "review_assay",
  "status": "failed",
  "exit_code": 2,
  "spec": {
    "revision": 0,
    "path": "examples/workflows/fixtures/crispr_assay.toml",
    "sha256": "871a58c33550d1b31e71eb03605bc7e9d2c4b3b1b3250982b5153054ea10bc9d"
  },
  "artifacts": [
    {
      "role": "counts",
      "path": "examples/workflows/fixtures/expected_counts.mageck.tsv",
      "exists": true,
      "safe_to_share": true,
      "sha256": "82c61e9c2eb2d7701fd7505f4fa466e50fdbabbaebc16c266f304e06f4c424d9",
      "bytes": 83
    },
    {
      "role": "sample_qc",
      "path": "examples/workflows/fixtures/expected_sample_qc.tsv",
      "exists": true,
      "safe_to_share": true,
      "sha256": "2d8d905ee296adfc2a3711f5ae50dd18782468c7ac704b07dee015954f77651d",
      "bytes": 594
    }
  ],
  "findings": [
    {
      "finding_id": "assignment_rate_below_min",
      "severity": "error",
      "message": "The checked sample_a fixture has assignment_rate 0.0, below the production threshold 0.8.",
      "source_artifact": "examples/workflows/fixtures/expected_sample_qc.tsv"
    },
    {
      "finding_id": "ambiguous_rate_above_max",
      "severity": "error",
      "message": "The checked sample_a fixture preserves ambiguous_rate 0.66666667 instead of forcing those reads into counts.",
      "source_artifact": "examples/workflows/fixtures/expected_sample_qc.tsv"
    }
  ],
  "resource_use": {
    "record_kind": "normalized_checked_fixture"
  },
  "next_actions": [
    {
      "tool": "inspect_assay",
      "reason": "Review unsafe correction-radius and low-assignment findings; do not force ambiguous reads."
    }
  ],
  "result": {
    "fixture": "committed synthetic CRISPR workflow fixture",
    "outcomes_preserved": ["unique", "ambiguous", "none", "invalid"],
    "claim_boundary": "This record checks assignment and evidence behavior; it is not biological screen evidence."
  }
}